CLI: repository, evidence, and search
These commands maintain the evidence Codifix uses for retrieval, provenance, and graph-aware context. They are usually run after onboarding, large refactors, provider changes, or repository history imports.
| Command | Writes | Purpose |
|---|---|---|
codifix commits | Yes | Import and inspect git commit history. |
codifix repo | Yes | Build and inspect the repository index. |
codifix graph | Yes | Extract and inspect the project code graph. |
codifix embeddings | Yes | Rebuild and maintain embedding spaces. |
codifix bundle | Mixed | Export and import shareable project codifix bundles. |
codifix commits
Import git history when commit context matters for future questions.
codifix commits sync --project memory
codifix commits sync --project memory --limit 100 --dry-run
codifix commits list --project memory --limit 20
codifix commits show <commit-hash> --project memoryCommit sync is evidence, not curation by itself. Pair it with query, scan, or explicit memories when decisions should become durable project knowledge.
codifix repo
The repository index records files and metadata used by scan and provenance workflows.
codifix repo index --project memory
codifix repo index --project memory --since 2026-04-01 --dry-run
codifix repo status --project memory --jsonRun it after major file moves or when scan/provenance output looks stale.
codifix graph
The graph command extracts parser-backed code symbols, references, and edges.
codifix graph extract --project memory
codifix graph extract --project memory --force --text
codifix graph status --project memoryGraph data helps query connect memory facts to code structure. It is especially useful after refactors where names or modules move without intended behavior changes.
codifix embeddings
Embedding commands maintain semantic search spaces.
codifix embeddings list
codifix embeddings activate voyage-code
codifix embeddings reindex --project memory --dry-run
codifix embeddings reembed --project memory --backend voyage-code
codifix embeddings prune --project memory --dry-runUse list before rebuilds. reindex rebuilds chunks and embeddings, while reembed fills configured embedding spaces without rebuilding chunks.
codifix bundle
Bundles move project memory between systems or preserve a point-in-time export.
codifix bundle export --project memory --out memory.mlbundle.zip
codifix bundle import --project memory ./memory.mlbundle.zip --dry-runReview bundle contents before import. Treat bundles as sensitive project data.